Insights into the host specificity of a new oomycete root pathogen, Pythium brassicum P1: whole genome sequencing and comparative analysis reveals contracted regulation of metabolism, protein families, and distinct pathogenicity repertoire.
alfaNET: A Database of Alfalfa-Bacterial Stem Blight Protein–Protein Interactions Revealing the Molecular Features of the Disease-causing Bacteria
Transcriptional profiling of two contrasting genotypes uncovers molecular mechanisms underlying salt tolerance in alfalfa
PredHPI: an integrated web server platform for the detection and visualization of host-pathogen interactions using sequence-based methods.
In silico prediction of host-pathogen protein interactions in melioidosis pathogen Burkholderia pseudomallei and human reveals novel virulence factors and their targets.
citSATdb: genome wide Simple Sequence Repeats (SSR) marker database of citrus species for germplasm characterization and improvement. Genes 11(12): 1486.
Plant-mSubP: a computational framework for the prediction of single- and multi-target protein subcellular localization using integrated machine learning approaches.
Developmental and Molecular Changes Underlying the Vernalization-Induced Transition to Flowering in Aquilegia coerulea (James). Genes, 10(10): 734. PMCID: 31546687
Impact of the Total Western Diet for Rodents on Colon Mucosal Gene Expression in a Multigenerational Murine Model of Colitis-associated Colorectal Cancer. Current Developments in Nutrition, 3(S1): nzz030.OR04-03-19
NGSEP3: accurate variant calling across species and sequencing protocols. Bioinformatics, 35(22): 4716-4723. PMCID: PMC6853766
Molecular characterization and expression analysis of the Na+/H+ exchanger gene family in Medicago truncatula. Functional & Integrative Genomics, 18(2): 141-153. PMID: 29280022
Gene expression analysis and DNA methylation patterns of porcine somatic cell nuclear transfer blastocysts with high and low incidence of apoptosis. Reproduction, Fertility and Development, 31(1): 128-128.
Tris(1,3-dichloro-2-propyl)phosphate Induces Genome-Wide Hypomethylation within Early Zebrafish Embryos. PMCID: PMC5080636
Predicting genome-scale Arabidopsis-Pseudomonas syringae interactome using domain and interolog-based approaches.PMCID: PMC4251041
LacSubPred: predicting subtypes of Laccases, an important lignin metabolism-related enzyme class, using in silico approaches.PMCID: PMC4251044
Identification and characterization of plastid-type proteins from sequence-attributed features using machine learning. PMCID: PMC3851450
PHDcleav: a SVM based method for predicting human Dicer cleavage sites using sequence and secondary structure of miRNA precursors. PMCID: PMC3851333
Combining machine learning and homology-based approaches to accurately predict subcellular localization in Arabidopsis. Plant Physiology 154(1): 36-54. PMCID: PMC2832251
Genomic inventory and transcriptional analysis of Medicago truncatula transporters. Plant Physiology152(3): 1716-1730. PMCID:PMC2832251
RSLpred: predicting subcellular localization of rice proteins combining compositional and evolutionary information. Proteomics 9(9): 2324-2342. PMCID:200700597
Development of weather based forewarning systems for rice blast. Himachal Journal of Agricultural Research 33(2): 211-217.
Machine learning techniques in disease forecasting: a case study on rice blast prediction. BMC Bioinformatics 7(1): 485. PMCID: PMC1647291
Genotype x environment interaction and stability analysis for yield and other quantitative traits in maize (Zea mays L.) under rainfed and high rainfall valley areas of the sub-montane. Research on Crops 7(1): 171-180.
Genetic variability and association studies for different yield components over the environments in elite cultivars of Zea mays L. Himachal Journal of Agricultural Research 31(1): 31-38.
Virulence pattern of Pyricularia grisea in district Kangra of Himachal Pradesh. Himachal Journal of Agricultural Research 31(2): 170-172.
Proceedings of the 2016 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.
Proceedings of the 2014 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.
Proceedings of the 2013 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.
Proceedings of the 2012 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.