Java memory size is set to 1200M
Launching application...

QualiMap v.2.2.1
Built on 2016-10-03 18:14

Selected tool: bamqc
Available memory (Mb): 32
Max memory (Mb): 1118
Thu Feb 01 04:25:53 CST 2024		WARNING	Output folder already exists, the results will be saved there

Starting bam qc....
Loading sam header...
Loading locator...
Loading reference...
Number of windows: 400, effective number of windows: 400
Chunk of reads size: 1000
Number of threads: 16
Processed 50 out of 400 windows...
Processed 100 out of 400 windows...
Processed 150 out of 400 windows...
Processed 200 out of 400 windows...
Processed 250 out of 400 windows...
Processed 300 out of 400 windows...
Processed 350 out of 400 windows...
Processed 400 out of 400 windows...
Total processed windows:400
Number of reads: 34732954
Number of valid reads: 29829027
Number of correct strand reads:0

Inside of regions...
Num mapped reads: 29829027
Num mapped first of pair: 14639335
Num mapped second of pair: 15189692
Num singletons: 361119
Time taken to analyze reads: 264
Computing descriptors...
numberOfMappedBases: 17942784928
referenceSize: 4411532
numberOfSequencedBases: 2943215718
numberOfAs: 686445557
Computing per chromosome statistics...
Computing histograms...
Overall analysis time: 268
end of bam qc
Computing report...
Writing HTML report...
HTML report created successfully

Finished