Java memory size is set to 1200M
Launching application...

QualiMap v.2.2.1
Built on 2016-10-03 18:14

Selected tool: bamqc
Available memory (Mb): 32
Max memory (Mb): 1118
Thu Feb 01 04:25:53 CST 2024		WARNING	Output folder already exists, the results will be saved there

Starting bam qc....
Loading sam header...
Loading locator...
Loading reference...
Number of windows: 400, effective number of windows: 400
Chunk of reads size: 1000
Number of threads: 16
Processed 50 out of 400 windows...
Processed 100 out of 400 windows...
Processed 150 out of 400 windows...
Processed 200 out of 400 windows...
Processed 250 out of 400 windows...
Processed 300 out of 400 windows...
Processed 350 out of 400 windows...
Processed 400 out of 400 windows...
Total processed windows:400
Number of reads: 29615840
Number of valid reads: 28011529
Number of correct strand reads:0

Inside of regions...
Num mapped reads: 28011529
Num mapped first of pair: 14001270
Num mapped second of pair: 14010259
Num singletons: 309053
Time taken to analyze reads: 2573
Computing descriptors...
numberOfMappedBases: 248689231559
referenceSize: 4411532
numberOfSequencedBases: 2789297672
numberOfAs: 535314114
Computing per chromosome statistics...
Computing histograms...
Overall analysis time: 2587
end of bam qc
Computing report...
Writing HTML report...
HTML report created successfully

Finished