OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=1024m; support was removed in 8.0 Failed to run bamqc java.lang.RuntimeException: The BAM file is empty or corrupt at org.bioinfo.ngs.qc.qualimap.process.BamStatsAnalysis.run(BamStatsAnalysis.java:520) at org.bioinfo.ngs.qc.qualimap.main.BamQcTool.execute(BamQcTool.java:242) at org.bioinfo.ngs.qc.qualimap.main.NgsSmartTool.run(NgsSmartTool.java:190) at org.bioinfo.ngs.qc.qualimap.main.NgsSmartMain.main(NgsSmartMain.java:111)