##fileformat=VCFv4.2
##FILTER=<ID=B,Description="Filter potential false positive variants adjacent to read start/end.
| :distance Filter base calls within distance to feature. Default: 6
| :minRatio Minimal ratio of base calls to pass filtering. Default: 0.5
">
##FILTER=<ID=I,Description="Filter potential false positive variants adjacent to INDEL
| position(s).
| :distance Filter base calls within distance to feature. Default: 6
| :minRatio Minimal ratio of base calls to pass filtering. Default: 0.5
">
##FILTER=<ID=Y,Description="Filter wrong variant calls within homopolymers.
| :length must be > 0. Default: 7
">
##FORMAT=<ID=BC,Number=4,Type=Integer,Description="Base call counts A,C,G,T">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##contig=<ID=AL123456.3,length=4411532>
##fileDate=20240107
##source=JACUSA2 Version: 2.0.2-RC call-1 -p 16 -r ../mtuberculosis2/4-snvCalling/calling/jacusa/mycobacteriumTuberculosis/SRR25792495.jacusa.vcf -s -f V -m 25 -q 35 -a B,I,Y ../mtuberculosis2/2-alignment/pathogen/bam/mycobacteriumTuberculosis/SRR25792495_hisat2.bam
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	11