[bwa_index] Pack FASTA... 27.43 sec
[bwa_index] Construct BWT for the packed sequence...
[BWTIncCreate] textLength=6596861272, availableWord=476179232
[BWTIncConstructFromPacked] 10 iterations done. 99999992 characters processed.
[BWTIncConstructFromPacked] 20 iterations done. 199999992 characters processed.
[BWTIncConstructFromPacked] 30 iterations done. 299999992 characters processed.
[BWTIncConstructFromPacked] 40 iterations done. 399999992 characters processed.
[BWTIncConstructFromPacked] 50 iterations done. 499999992 characters processed.
[BWTIncConstructFromPacked] 60 iterations done. 599999992 characters processed.
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[BWTIncConstructFromPacked] 80 iterations done. 799999992 characters processed.
[BWTIncConstructFromPacked] 90 iterations done. 899999992 characters processed.
[BWTIncConstructFromPacked] 100 iterations done. 999999992 characters processed.
[BWTIncConstructFromPacked] 110 iterations done. 1099999992 characters processed.
[BWTIncConstructFromPacked] 120 iterations done. 1199999992 characters processed.
[BWTIncConstructFromPacked] 130 iterations done. 1299999992 characters processed.
[BWTIncConstructFromPacked] 140 iterations done. 1399999992 characters processed.
[BWTIncConstructFromPacked] 150 iterations done. 1499999992 characters processed.
[BWTIncConstructFromPacked] 160 iterations done. 1599999992 characters processed.
[BWTIncConstructFromPacked] 170 iterations done. 1699999992 characters processed.
[BWTIncConstructFromPacked] 180 iterations done. 1799999992 characters processed.
[BWTIncConstructFromPacked] 190 iterations done. 1899999992 characters processed.
[BWTIncConstructFromPacked] 200 iterations done. 1999999992 characters processed.
[BWTIncConstructFromPacked] 210 iterations done. 2099999992 characters processed.
[BWTIncConstructFromPacked] 220 iterations done. 2199999992 characters processed.
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[BWTIncConstructFromPacked] 260 iterations done. 2599999992 characters processed.
[BWTIncConstructFromPacked] 270 iterations done. 2699999992 characters processed.
[BWTIncConstructFromPacked] 280 iterations done. 2799999992 characters processed.
[BWTIncConstructFromPacked] 290 iterations done. 2899999992 characters processed.
[BWTIncConstructFromPacked] 300 iterations done. 2999999992 characters processed.
[BWTIncConstructFromPacked] 310 iterations done. 3099999992 characters processed.
[BWTIncConstructFromPacked] 320 iterations done. 3199999992 characters processed.
[BWTIncConstructFromPacked] 330 iterations done. 3299999992 characters processed.
[BWTIncConstructFromPacked] 340 iterations done. 3399999992 characters processed.
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[BWTIncConstructFromPacked] 360 iterations done. 3599999992 characters processed.
[BWTIncConstructFromPacked] 370 iterations done. 3699999992 characters processed.
[BWTIncConstructFromPacked] 380 iterations done. 3799999992 characters processed.
[BWTIncConstructFromPacked] 390 iterations done. 3899999992 characters processed.
[BWTIncConstructFromPacked] 400 iterations done. 3999999992 characters processed.
[BWTIncConstructFromPacked] 410 iterations done. 4099999992 characters processed.
[BWTIncConstructFromPacked] 420 iterations done. 4199999992 characters processed.
[BWTIncConstructFromPacked] 430 iterations done. 4299999992 characters processed.
[BWTIncConstructFromPacked] 440 iterations done. 4399999992 characters processed.
[BWTIncConstructFromPacked] 450 iterations done. 4499999992 characters processed.
[BWTIncConstructFromPacked] 460 iterations done. 4599999992 characters processed.
[BWTIncConstructFromPacked] 470 iterations done. 4699999992 characters processed.
[BWTIncConstructFromPacked] 480 iterations done. 4799999992 characters processed.
[BWTIncConstructFromPacked] 490 iterations done. 4899999992 characters processed.
[BWTIncConstructFromPacked] 500 iterations done. 4999999992 characters processed.
[BWTIncConstructFromPacked] 510 iterations done. 5099999992 characters processed.
[BWTIncConstructFromPacked] 520 iterations done. 5199999992 characters processed.
[BWTIncConstructFromPacked] 530 iterations done. 5299999992 characters processed.
[BWTIncConstructFromPacked] 540 iterations done. 5399999992 characters processed.
[BWTIncConstructFromPacked] 550 iterations done. 5499999992 characters processed.
[BWTIncConstructFromPacked] 560 iterations done. 5599999992 characters processed.
[BWTIncConstructFromPacked] 570 iterations done. 5699999992 characters processed.
[BWTIncConstructFromPacked] 580 iterations done. 5799999992 characters processed.
[BWTIncConstructFromPacked] 590 iterations done. 5899999992 characters processed.
[BWTIncConstructFromPacked] 600 iterations done. 5996509032 characters processed.
[BWTIncConstructFromPacked] 610 iterations done. 6082533112 characters processed.
[BWTIncConstructFromPacked] 620 iterations done. 6158987528 characters processed.
[BWTIncConstructFromPacked] 630 iterations done. 6226936392 characters processed.
[BWTIncConstructFromPacked] 640 iterations done. 6287325512 characters processed.
[BWTIncConstructFromPacked] 650 iterations done. 6340995480 characters processed.
[BWTIncConstructFromPacked] 660 iterations done. 6388693480 characters processed.
[BWTIncConstructFromPacked] 670 iterations done. 6431083592 characters processed.
[BWTIncConstructFromPacked] 680 iterations done. 6468755960 characters processed.
[BWTIncConstructFromPacked] 690 iterations done. 6502235256 characters processed.
[BWTIncConstructFromPacked] 700 iterations done. 6531987704 characters processed.
[BWTIncConstructFromPacked] 710 iterations done. 6558427720 characters processed.
[BWTIncConstructFromPacked] 720 iterations done. 6581923640 characters processed.
[bwt_gen] Finished constructing BWT in 728 iterations.
[bwa_index] 2136.71 seconds elapse.
[bwa_index] Update BWT... 20.65 sec
[bwa_index] Pack forward-only FASTA... 18.34 sec
[bwa_index] Construct SA from BWT and Occ... 729.64 sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa index -a bwtsw ../influenzaA/2-alignment/host/indices/bwa/Homo_sapiens_GRCh38
[main] Real time: 2950.251 sec; CPU: 2932.783 sec