[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 115856 sequences (11585600 bp)...
[M::mem_process_seqs] Processed 115856 reads in 6.526 CPU sec, 0.434 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -t 16 ../influenzaA/2-alignment/pathogen/indices/bwa/influenzaA ../influenzaA/2-alignment/host/fastq/DRR051444.fastq
[main] Real time: 0.819 sec; CPU: 6.775 sec