[M::bwa_idx_load_from_disk] read 0 ALT contigs [M::process] read 374342 sequences (37434200 bp)... [M::mem_process_seqs] Processed 374342 reads in 102.427 CPU sec, 6.631 real sec [main] Version: 0.7.17-r1188 [main] CMD: bwa mem -t 16 ../influenzaA/2-alignment/host/indices/bwa/Homo_sapiens_GRCh38 ../influenzaA/1-quality/fastq/DRR051444.fastq [main] Real time: 13.707 sec; CPU: 107.266 sec