[M::bwa_idx_load_from_disk] read 0 ALT contigs [M::process] read 253441 sequences (25344100 bp)... [M::mem_process_seqs] Processed 253441 reads in 65.362 CPU sec, 4.213 real sec [main] Version: 0.7.17-r1188 [main] CMD: bwa mem -t 16 ../influenzaA/2-alignment/host/indices/bwa/Homo_sapiens_GRCh38 ../influenzaA/1-quality/fastq/DRR051442.fastq [main] Real time: 10.438 sec; CPU: 69.448 sec