[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 792026 sequences (79202600 bp)...
[M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (2, 3077, 0, 3)
[M::mem_pestat] skip orientation FF as there are not enough pairs
[M::mem_pestat] analyzing insert size distribution for orientation FR...
[M::mem_pestat] (25, 50, 75) percentile: (149, 179, 211)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (25, 335)
[M::mem_pestat] mean and std.dev: (182.19, 45.93)
[M::mem_pestat] low and high boundaries for proper pairs: (1, 397)
[M::mem_pestat] skip orientation RF as there are not enough pairs
[M::mem_pestat] skip orientation RR as there are not enough pairs
[M::mem_process_seqs] Processed 792026 reads in 36.299 CPU sec, 2.788 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -t 16 -k 50 ../influenzaA/2-alignment/pathogen/indices/bwa/influenzaA ../influenzaA/2-alignment/host/fastq/DRR051450_1.fastq ../influenzaA/2-alignment/host/fastq/DRR051450_2.fastq
[main] Real time: 4.181 sec; CPU: 37.118 sec