[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 348844 sequences (34884400 bp)...
[M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (5, 1510, 0, 3)
[M::mem_pestat] skip orientation FF as there are not enough pairs
[M::mem_pestat] analyzing insert size distribution for orientation FR...
[M::mem_pestat] (25, 50, 75) percentile: (151, 181, 213)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (27, 337)
[M::mem_pestat] mean and std.dev: (183.46, 47.33)
[M::mem_pestat] low and high boundaries for proper pairs: (1, 399)
[M::mem_pestat] skip orientation RF as there are not enough pairs
[M::mem_pestat] skip orientation RR as there are not enough pairs
[M::mem_process_seqs] Processed 348844 reads in 19.752 CPU sec, 1.465 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -t 16 -k 50 ../influenzaA/2-alignment/pathogen/indices/bwa/influenzaA ../influenzaA/2-alignment/host/fastq/DRR051423_1.fastq ../influenzaA/2-alignment/host/fastq/DRR051423_2.fastq
[main] Real time: 2.125 sec; CPU: 20.066 sec