[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 148367 sequences (14836700 bp)...
[M::mem_process_seqs] Processed 148367 reads in 7.666 CPU sec, 0.575 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -t 16 ../influenzaA/2-alignment/pathogen/indices/bwa/influenzaA ../influenzaA/2-alignment/host/fastq/DRR051444.fastq
[main] Real time: 0.974 sec; CPU: 7.963 sec