[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 67944 sequences (6794400 bp)...
[M::mem_process_seqs] Processed 67944 reads in 4.120 CPU sec, 0.277 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -t 16 ../influenzaA/2-alignment/pathogen/indices/bwa/influenzaA ../influenzaA/2-alignment/host/fastq/DRR051442.fastq
[main] Real time: 0.487 sec; CPU: 4.259 sec