[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 848600 sequences (84860000 bp)...
[M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (0, 276, 0, 1)
[M::mem_pestat] skip orientation FF as there are not enough pairs
[M::mem_pestat] analyzing insert size distribution for orientation FR...
[M::mem_pestat] (25, 50, 75) percentile: (129, 163, 190)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (7, 312)
[M::mem_pestat] mean and std.dev: (159.58, 47.85)
[M::mem_pestat] low and high boundaries for proper pairs: (1, 373)
[M::mem_pestat] skip orientation RF as there are not enough pairs
[M::mem_pestat] skip orientation RR as there are not enough pairs
[M::mem_process_seqs] Processed 848600 reads in 80.402 CPU sec, 5.433 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -t 16 -k 50 -w 50 ../influenzaA/2-alignment/host/indices/bwa/Homo_sapiens_GRCh38 ../influenzaA/1-quality/fastq/DRR051450_1.fastq ../influenzaA/1-quality/fastq/DRR051450_2.fastq
[main] Real time: 14.574 sec; CPU: 85.786 sec