[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 830136 sequences (83013600 bp)...
[M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (0, 88, 0, 0)
[M::mem_pestat] skip orientation FF as there are not enough pairs
[M::mem_pestat] analyzing insert size distribution for orientation FR...
[M::mem_pestat] (25, 50, 75) percentile: (104, 145, 200)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 392)
[M::mem_pestat] mean and std.dev: (153.41, 72.08)
[M::mem_pestat] low and high boundaries for proper pairs: (1, 488)
[M::mem_pestat] skip orientation RF as there are not enough pairs
[M::mem_pestat] skip orientation RR as there are not enough pairs
[M::mem_process_seqs] Processed 830136 reads in 171.914 CPU sec, 10.930 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -t 16 -k 50 -w 50 ../influenzaA/2-alignment/host/indices/bwa/Homo_sapiens_GRCh38 ../influenzaA/1-quality/fastq/DRR051428_1.fastq ../influenzaA/1-quality/fastq/DRR051428_2.fastq
[main] Real time: 20.994 sec; CPU: 178.252 sec