21:55:20 [INFO ]  Executing step discardHighError only...
21:55:32 [INFO ]  ===> fastq-dump
21:55:32 [INFO ]  ===> ../tools/jdk-13.0.2/bin/java -version
21:55:33 [INFO ]  ===> samtools
21:55:33 [INFO ]  ===> ../tools/qualimap_v2.2.1/qualimap --version
21:55:34 [INFO ]  ===> ../tools/FastQC/fastqc
21:55:35 [INFO ]  ===> ../tools/jdk-13.0.2/bin/java -jar ../tools/snpEff/snpEff.jar -version
21:55:35 [INFO ]  ===> bcftools
21:55:36 [INFO ]  ===> ../tools/jdk-13.0.2/bin/java -jar ../tools/Trimmomatic-0.39/trimmomatic-0.39.jar
21:55:36 [INFO ]  ===> ../tools/REDItools2/env/bin/python2 ../tools/REDItools2/src/cineca/reditools.py
21:55:38 [INFO ]  ===> bwa
21:55:38 [INFO ]  DRR051417 already downloaded. Skipping...
21:55:38 [INFO ]  DRR051423 already downloaded. Skipping...
21:55:38 [INFO ]  DRR051428 already downloaded. Skipping...
21:55:38 [INFO ]  DRR051431 already downloaded. Skipping...
21:55:38 [INFO ]  DRR051442 already downloaded. Skipping...
21:55:38 [INFO ]  DRR051444 already downloaded. Skipping...
21:55:38 [INFO ]  DRR051450 already downloaded. Skipping...
21:55:38 [INFO ]  ===> rm -r ../influenzaA/data/sra
21:55:38 [INFO ]  Running step discardHighError...
21:55:38 [INFO ]  Discarding high error runs...
21:55:38 [INFO ]  Discarded run DRR051444.