13:16:39 [INFO ]  Resuming from step mergeCalling...
13:16:43 [INFO ]  ===> fastq-dump
13:16:43 [INFO ]  ===> ../tools/jdk-13.0.2/bin/java -version
13:16:44 [INFO ]  ===> samtools
13:16:44 [INFO ]  ===> ../tools/qualimap_v2.2.1/qualimap --version
13:16:44 [INFO ]  ===> ../tools/FastQC/fastqc
13:16:45 [INFO ]  ===> ../tools/jdk-13.0.2/bin/java -jar ../tools/snpEff/snpEff.jar -version
13:16:45 [INFO ]  ===> bcftools
13:16:45 [INFO ]  ===> ../tools/jdk-13.0.2/bin/java -jar ../tools/Trimmomatic-0.39/trimmomatic-0.39.jar
13:16:45 [INFO ]  ===> ../tools/REDItools2/env/bin/python2 ../tools/REDItools2/src/cineca/reditools.py
13:16:47 [INFO ]  ===> STAR
13:16:47 [INFO ]  Running step mergeCalling...
13:16:47 [INFO ]  Analyzing calling results from DRR051417 vs influenzaA...