### STAR --runMode genomeGenerate --runThreadN 16 --genomeDir ../influenzaA/2-alignment/pathogen/indices/influenzaA_star --genomeFastaFiles ../influenzaA/data/influenzaA/genome.fa --genomeSAindexNbases 3 ### GstrandBit 32 versionGenome 2.7.4a genomeType Full genomeFastaFiles ../influenzaA/data/influenzaA/genome.fa genomeSAindexNbases 3 genomeChrBinNbits 18 genomeSAsparseD 1 genomeTransformType None genomeTransformVCF - sjdbOverhang 0 sjdbFileChrStartEnd - sjdbGTFfile - sjdbGTFchrPrefix - sjdbGTFfeatureExon exon sjdbGTFtagExonParentTranscript transcript_id sjdbGTFtagExonParentGene gene_id sjdbInsertSave Basic genomeFileSizes 2097152 112426