Java memory size is set to 1200M
Launching application...

QualiMap v.2.2.1
Built on 2016-10-03 18:14

Selected tool: bamqc
Available memory (Mb): 32
Max memory (Mb): 1118
Thu Jan 25 04:49:13 CST 2024		WARNING	Output folder already exists, the results will be saved there

Starting bam qc....
Loading sam header...
Loading locator...
Loading reference...
Number of windows: 400, effective number of windows: 487
Chunk of reads size: 1000
Number of threads: 16
Processed 50 out of 487 windows...
Processed 100 out of 487 windows...
Processed 150 out of 487 windows...
Processed 200 out of 487 windows...
Processed 250 out of 487 windows...
Processed 300 out of 487 windows...
Processed 350 out of 487 windows...
Processed 400 out of 487 windows...
Processed 450 out of 487 windows...
Total processed windows:487
Number of reads: 9576101
Number of valid reads: 9226209
Number of correct strand reads:0

Inside of regions...
Num mapped reads: 9226209
Num mapped first of pair: 4633216
Num mapped second of pair: 4592993
Num singletons: 238324
Time taken to analyze reads: 40
Computing descriptors...
numberOfMappedBases: 969956852
referenceSize: 30483324
numberOfSequencedBases: 718189766
numberOfAs: 181426059
Computing per chromosome statistics...
Computing histograms...
Overall analysis time: 42
end of bam qc
Computing report...
Writing HTML report...
HTML report created successfully

Finished